45:1

Foundation
The Goa'uld threat is discovered in the Unknown Regions, and a new task force is quickly assembled to deal with it.

46:5

The Move to Farpoint
The task force moves to a new permanent home on the planet Farpoint.

47:5

The Fall of Sobek
Action is taken as the Steele-Sobek alliance's ultimate weapon nears completion.

48:1

Eye of the Storm
In a period of relative peace, Rogue Squadron skirmishes with smaller Goa'uld intrusions.

48:2

Pirates of Wild Space
Pirate groups operating on the fringes of Known Space begin to encroach on Rogue Squadron's operations.

48:4

Internal Strife
Dissident New Republic Intelligence agents cause grief for members of Rogue Squadron.

48:5

The Holy Grail
Rogue Squadron races across Goa'uld space to reclaim an Ancient artefact.

48:5

A New Threat
A mysterious Goa'uld reorganises formerly allied forces against Rogue Squadron.

48:6

The Fight Back
Rogue Squadron launches a series of attempts to set back the new Goa'uld leader's efforts.

49:1

Malphuus Resurfaces
Rogue Squadron comes up against the System Lord Ba'al and his new associate--the cloned Imperial General Malphuus.

49:4

Khepri the Betrayer
Rogue Squadron forms a shakey alliance with a devious System Lord.

49:7

The New Empire
Malphuus begins a quest for advanced technology, leading Rogue Squadron to seek new allies.

49:10

The Triumvirate
Rogue Squadron is caught in a war between Malphuus's empire and a break-away faction.

50:3

Dissension
Betrayal brings Rogue Squadron to the brink of tearing itself apart.

50:6

The Dukhang Crisis
Rogue Squadron battles a fearsome new enemy.

51:1

Nefru's Fury
As Rogue Squadron learns the true origins of the Dukhang, a means to end their rampage is uncovered.

51:7

Triumvirate Resurgent
As planets across the Unknown Regions recover from the Dukhang Crisis, an old enemy attempts to solidify their power.